| Standings | P | W | D | L | GD | PTS | |
|---|---|---|---|---|---|---|---|
| 1 | Harju JK Laagri | 36 | 22 | 12 | 2 | 68 | 78 |
| 2 | Viimsi | 36 | 22 | 9 | 5 | 33 | 75 |
| 3 | Flora Tallinn U21 | 36 | 20 | 6 | 10 | 41 | 66 |
| 4 | Tartu JK Welco | 36 | 16 | 12 | 8 | 26 | 60 |
| 5 | FC Tallinn | 36 | 15 | 8 | 13 | 13 | 53 |
| 6 | FCI Levadia II | 36 | 13 | 5 | 18 | -11 | 44 |
| 7 | Tallinna Kalev U21 | 36 | 11 | 9 | 16 | -15 | 42 |
| 8 | FC Elva | 36 | 10 | 11 | 15 | -15 | 41 |
| 9 | Paide Linnameeskond U21 | 36 | 7 | 4 | 25 | -74 | 25 |
| 10 | JK Tabasalu | 36 | 4 | 4 | 28 | -66 | 16 |